BEDTools-2.26.0-1.el7.x86_64.rpm


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Description

BEDTools - A flexible suite of utilities for comparing genomic features

Property Value
Distribution CentOS 7
Repository EPEL x86_64
Package name BEDTools
Package version 2.26.0
Package release 1.el7
Package architecture x86_64
Package type rpm
Installed size 12.75 MB
Download size 7.60 MB
Official Mirror dl.fedoraproject.org
The BEDTools utilities allow one to address common genomics tasks such
as finding feature overlaps and computing coverage. The utilities are
largely based on four widely-used file formats: BED, GFF/GTF, VCF, and
SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that
answer complicated research questions by "streaming" several BEDTools
together.

Alternatives

Package Version Architecture Repository
BEDTools - - -

Requires

Name Value
libc.so.6(GLIBC_2.15)(64bit) -
libgcc_s.so.1()(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libstdc++.so.6()(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.11)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.15)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.9)(64bit) -
libz.so.1()(64bit) -
rtld(GNU_HASH) -

Provides

Name Value
BEDTools = 2.26.0-1.el7
BEDTools(x86-64) = 2.26.0-1.el7

Download

Type URL
Binary Package BEDTools-2.26.0-1.el7.x86_64.rpm
Source Package BEDTools-2.26.0-1.el7.src.rpm

Install Howto

  1. Download latest epel-release rpm from
    http://dl.fedoraproject.org/pub/epel/7/x86_64/
  2. Install epel-release rpm:
    # rpm -Uvh epel-release*rpm
  3. Install BEDTools rpm package:
    # yum install BEDTools

Files

Path
/usr/bin/annotateBed
/usr/bin/bamToBed
/usr/bin/bamToFastq
/usr/bin/bed12ToBed6
/usr/bin/bedToBam
/usr/bin/bedToIgv
/usr/bin/bedpeToBam
/usr/bin/bedtools
/usr/bin/closestBed
/usr/bin/clusterBed
/usr/bin/complementBed
/usr/bin/coverageBed
/usr/bin/expandCols
/usr/bin/fastaFromBed
/usr/bin/flankBed
/usr/bin/genomeCoverageBed
/usr/bin/getOverlap
/usr/bin/groupBy
/usr/bin/intersectBed
/usr/bin/linksBed
/usr/bin/mapBed
/usr/bin/maskFastaFromBed
/usr/bin/mergeBed
/usr/bin/multiBamCov
/usr/bin/multiIntersectBed
/usr/bin/nucBed
/usr/bin/pairToBed
/usr/bin/pairToPair
/usr/bin/randomBed
/usr/bin/shiftBed
/usr/bin/shuffleBed
/usr/bin/slopBed
/usr/bin/sortBed
/usr/bin/subtractBed
/usr/bin/tagBam
/usr/bin/unionBedGraphs
/usr/bin/windowBed
/usr/bin/windowMaker
/usr/share/BEDTools/
/usr/share/BEDTools/data/aluY.chr1.bed.gz
/usr/share/BEDTools/data/gerp.chr1.bed.gz
/usr/share/BEDTools/data/knownGene.hg18.chr21.bed
/usr/share/BEDTools/data/knownGene.hg18.chr21.short.bed
/usr/share/BEDTools/data/refseq.chr1.exons.bed.gz
/usr/share/BEDTools/data/simpleRepeats.chr1.bed.gz
/usr/share/BEDTools/genomes/human.hg18.genome
/usr/share/BEDTools/genomes/human.hg19.genome
/usr/share/BEDTools/genomes/human.hg38.genome
/usr/share/BEDTools/genomes/mouse.mm10.genome
/usr/share/BEDTools/genomes/mouse.mm8.genome
/usr/share/BEDTools/genomes/mouse.mm9.genome
/usr/share/doc/BEDTools-2.26.0/LICENSE
/usr/share/doc/BEDTools-2.26.0/README.md
/usr/share/doc/BEDTools-2.26.0/RELEASE_HISTORY
/usr/share/doc/BEDTools-2.26.0/docs/Makefile
/usr/share/doc/BEDTools-2.26.0/docs/bedtools.ai
/usr/share/doc/BEDTools-2.26.0/docs/bedtools.png
/usr/share/doc/BEDTools-2.26.0/docs/bedtools.swiss.png
/usr/share/doc/BEDTools-2.26.0/docs/build.sh
/usr/share/doc/BEDTools-2.26.0/docs/conf.py
/usr/share/doc/BEDTools-2.26.0/docs/index.rst
/usr/share/doc/BEDTools-2.26.0/docs/make.bat
/usr/share/doc/BEDTools-2.26.0/docs/_build/
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/environment.pickle
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/index.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/advanced-usage.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/bedtools-suite.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/example-usage.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/faq.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/general-usage.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/history.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/installation.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/overview.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/quick-start.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/related-tools.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tips-and-tricks.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/annotate.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/bamtobed.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/bamtofastq.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/bed12tobed6.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/bedpetobam.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/bedtobam.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/closest.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/cluster.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/complement.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/coverage.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/expand.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/fisher.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/flank.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/genomecov.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/getfasta.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/groupby.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/igv.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/intersect.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/jaccard.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/links.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/makewindows.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/map.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/maskfasta.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/merge.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/multicov.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/multiinter.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/nuc.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/overlap.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/pairtobed.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/pairtopair.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/random.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/reldist.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/shift.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/shuffle.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/slop.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/sort.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/subtract.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/tag.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/unionbedg.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/doctrees/content/tools/window.doctree
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/.buildinfo
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/genindex.html
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/index.html
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/objects.inv
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/search.html
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/searchindex.js
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/barski_binding_site.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/bedtoolsMenu.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/closest-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/cluster-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/complement-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/flank-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/galaxy-bedtools.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/genomecov-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/getfasta-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/github-zip-button.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/intersect-glyph.png
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/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/map-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/map-speed-comparo.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/maskfasta-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/memory-comparo.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/merge-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/random-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/reldist-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/reldist-plot.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/res-genes.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/shuffle-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/slop-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/speed-comparo.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/subtract-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_images/window-glyph.png
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/index.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/advanced-usage.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/bedtools-suite.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/example-usage.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/faq.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/general-usage.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/history.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/installation.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/overview.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/quick-start.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/related-tools.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tips-and-tricks.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/annotate.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/bamtobed.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/bamtofastq.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/bed12tobed6.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/bedpetobam.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/bedtobam.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/closest.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/cluster.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/complement.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/coverage.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/expand.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/fisher.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/flank.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/genomecov.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/getfasta.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/groupby.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/igv.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/intersect.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/jaccard.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/links.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/makewindows.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/map.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/maskfasta.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/merge.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/multicov.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/multiinter.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/nuc.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/overlap.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/pairtobed.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/pairtopair.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/random.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/reldist.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/shift.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/shuffle.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/slop.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/sort.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/subtract.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/tag.txt
/usr/share/doc/BEDTools-2.26.0/docs/_build/html/_sources/content/tools/unionbedg.txt
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Changelog

2016-07-09 - Adam Huffman <bloch@verdurin.com> - 2.26.0-1
- Update to latest upstream release 2.26.0
2016-02-03 - Fedora Release Engineering <releng@fedoraproject.org> - 2.25.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
2015-09-05 - Adam Huffman <bloch@verdurin.com> - 2.25.0-1
- Update to latest upstream release 2.25.0
- Disable upstreamed patches
- Disable double path separator patch for now
2015-08-23 - Adam Huffman <bloch@verdurin.com> - 2.24.0-6
- Fix binary directory path
2015-07-18 - Adam Huffman <bloch@verdurin.com> - 2.24.0-5
- Re-enable 32-bit and ARM builds
2015-07-17 - Adam Huffman <bloch@verdurin.com> - 2.24.0-4
- Add temporary patches to fix 32-bit compilation derived from upstream commits
2015-07-12 - Adam Huffman <bloch@verdurin.com> - 2.24.0-3
- Disable i686 build until upstream fixes arrive
2015-07-03 - Peter Robinson <pbrobinson@fedoraproject.org> 2.24.0-2
- Disable hardened build
- Exclude ARMv7 for the moment (tracked rhbz 1239119)
2015-07-01 - Adam Huffman <bloch@verdurin.com> - 2.24.0-1
- Disable debuginfo for now to re-enable build
- Disable debuginfo-related patches for now
2015-06-16 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.23.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild

See Also

Package Description
BackupPC-3.3.1-5.el7.x86_64.rpm High-performance backup system
BackupPC-XS-0.53-1.el7.x86_64.rpm Implementation of various BackupPC functions in a perl-callable module
BareBonesBrowserLaunch-3.1-7.el7.noarch.rpm Simple library to launch a browser window from Java
BareBonesBrowserLaunch-javadoc-3.1-7.el7.noarch.rpm Javadocs for BareBonesBrowserLaunch
BibTool-2.63-1.el7.x86_64.rpm A Tool for manipulating BibTeX data bases
CBFlib-0.9.5.1-1.el7.x86_64.rpm Crystallographic Binary File and Image Library
CBFlib-devel-0.9.5.1-1.el7.x86_64.rpm Header files and library for developing programs with cbf
CGSI-gSOAP-1.3.11-1.el7.x86_64.rpm GSI plugin for gSOAP
CGSI-gSOAP-devel-1.3.11-1.el7.x86_64.rpm GSI plugin for gSOAP - development files
CUnit-2.1.3-8.el7.x86_64.rpm Unit testing framework for C
CUnit-devel-2.1.3-8.el7.x86_64.rpm Header files and libraries for CUnit development
Canna-3.7p3-43.el7.x86_64.rpm A Japanese character set input system
Canna-devel-3.7p3-43.el7.x86_64.rpm Header file and library for developing programs which use Canna
Canna-libs-3.7p3-43.el7.x86_64.rpm The runtime library for Canna
CharLS-1.0-5.el7.x86_64.rpm An optimized implementation of the JPEG-LS standard
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