bwa-0.5.9-1.sdl6.x86_64.rpm


Advertisement

Description

bwa - Burrows-Wheeler Alignment tool

Property Value
Distribution CentOS 6
Repository PUIAS Computational x86_64
Package name bwa
Package version 0.5.9
Package release 1.sdl6
Package architecture x86_64
Package type rpm
Installed size 255.84 KB
Download size 119.46 KB
Official Mirror springdale.math.ias.edu
BWA is a program for aligning sequencing reads against a large
reference genome (e.g. human genome). It has two major components, one
for read shorter than 150bp and the other for longer reads.

Alternatives

Package Version Architecture Repository
bwa-0.5.9-1.sdl6.i686.rpm 0.5.9 i686 PUIAS Computational
bwa-0.5.9-1.el6.x86_64.rpm 0.5.9 x86_64 EPEL
bwa-0.5.9-1.el6.i686.rpm 0.5.9 i686 EPEL
bwa - - -

Requires

Name Value
/usr/bin/perl -
libc.so.6(GLIBC_2.7)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libpthread.so.0()(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libz.so.1()(64bit) -
perl(Getopt::Std) -
perl(strict) -
perl(warnings) -
rtld(GNU_HASH) -

Provides

Name Value
bwa = 0.5.9-1.sdl6
bwa(x86-64) = 0.5.9-1.sdl6

Download

Type URL
Binary Package bwa-0.5.9-1.sdl6.x86_64.rpm
Source Package bwa-0.5.9-1.sdl6.src.rpm

Install Howto

  1. Download latest puias-computational rpm from
    http://springdale.math.ias.edu/data/puias/computational/6/x86_64/
  2. Install puias-computational rpm:
    # rpm -Uvh puias-computational*rpm
  3. Install bwa rpm package:
    # yum install bwa

Files

Path
/usr/bin/bwa
/usr/bin/qualfa2fq.pl
/usr/bin/solid2fastq.pl
/usr/share/doc/bwa-0.5.9/COPYING
/usr/share/doc/bwa-0.5.9/NEWS
/usr/share/man/man1/bwa.1.gz

Changelog

2011-02-17 - Adam Huffman <bloch@verdurin.com> - 0.5.9-1
- new upstream release 0.5.9
2011-02-08 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org>
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
2011-01-05 - Adam Huffman <bloch@verdurin.com> - 0.5.8c-1
- upstream bugfix release
2010-07-20 - Adam Huffman <bloch@verdurin.com> - 0.5.8a-1
- new upstream release
2010-05-29 - Adam Huffman <bloch@verdurin.com> - 0.5.7-2
- fix source URL
- install manpage
- fix cflags
2010-05-28 - Adam Huffman <bloch@verdurin.com> - 0.5.7-1
- initial version

See Also

Package Description
bxh-xcede-tools-1.10.7-2.sdl6.x86_64.rpm BIAC XML header tools
bxh-xcede-tools-devel-1.10.7-2.sdl6.x86_64.rpm Development Libraries and Headers for bxh-xcede-tools
cantera-2.0.1-1.sdl6.1.x86_64.rpm An object-oriented software toolkit for chemical kinetics, thermodynamics, and transport processes
cddlib-devel-094f-9.puias6.i686.rpm Header and static libraries for cddlib
cddlib-devel-094f-9.puias6.x86_64.rpm Header and static libraries for cddlib
cdecl-2.5-31.x86_64.rpm Encoding/decoding utilities for C/C++ function declarations
cfitsio-3.360-1.sdl6.x86_64.rpm Library for manipulating FITS data files
cfitsio-devel-3.360-1.sdl6.x86_64.rpm Headers required when building programs against cfitsio
cfitsio-docs-3.360-1.sdl6.noarch.rpm Documentation for cfitsio
cfitsio-static-3.360-1.sdl6.x86_64.rpm Static cfitsio library
cfitsio3240-3.240-2.sdl6.x86_64.rpm Library for manipulating FITS data files
cfitsio3240-devel-3.240-2.sdl6.x86_64.rpm Headers required when building programs against cfitsio
cfitsio3240-docs-3.240-2.sdl6.noarch.rpm Documentation for cfitsio
cfitsio3240-static-3.240-2.sdl6.x86_64.rpm Static cfitsio library
chealpix-2.13a-2.1.sdl6.x86_64.rpm HEALPix C Bindings Library
Advertisement
Advertisement