wise2-2.2.0-7.puias6.i686.rpm


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Description

wise2 - Tools for comparison of biopolymers

Property Value
Distribution CentOS 6
Repository PUIAS Computational i386
Package name wise2
Package version 2.2.0
Package release 7.puias6
Package architecture i686
Package type rpm
Installed size 7.41 MB
Download size 1.79 MB
Official Mirror springdale.math.ias.edu
Wise2 is a package focused on comparisons of biopolymers, commonly DNA
sequence and protein sequence.  A strength of Wise2 is the
comparison of DNA sequence at the level of its protein
translation. This comparison allows the simultaneous prediction of
gene structure with homology based alignment.

Alternatives

Package Version Architecture Repository
wise2-2.2.0-14.el6.i686.rpm 2.2.0 i686 EPEL
wise2-2.2.0-14.el6.x86_64.rpm 2.2.0 x86_64 EPEL
wise2-2.2.0-7.puias6.x86_64.rpm 2.2.0 x86_64 PUIAS Computational
wise2 - - -

Requires

Name Value
libc.so.6(GLIBC_2.7) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
rtld(GNU_HASH) -

Provides

Name Value
config(wise2) = 2.2.0-7.puias6
wise2 = 2.2.0-7.puias6
wise2(x86-32) = 2.2.0-7.puias6

Download

Type URL
Binary Package wise2-2.2.0-7.puias6.i686.rpm
Source Package wise2-2.2.0-7.puias6.src.rpm

Install Howto

  1. Download the latest puias-computational rpm from
    http://springdale.math.ias.edu/data/puias/computational/6/i386/
  2. Install puias-computational rpm:
    # rpm -Uvh puias-computational*rpm
  3. Install wise2 rpm package:
    # yum install wise2

Files

Path
/etc/profile.d/wise2.csh
/etc/profile.d/wise2.sh
/usr/bin/dba
/usr/bin/dnal
/usr/bin/estwise
/usr/bin/estwisedb
/usr/bin/genewise
/usr/bin/genewisedb
/usr/bin/genomewise
/usr/bin/psw
/usr/bin/pswdb
/usr/share/doc/wise2-2.2.0/INSTALL
/usr/share/doc/wise2-2.2.0/LICENSE
/usr/share/doc/wise2-2.2.0/LICENSE.GPL
/usr/share/doc/wise2-2.2.0/LICENSE.base
/usr/share/doc/wise2-2.2.0/LICENSE.dyc
/usr/share/doc/wise2-2.2.0/LICENSE.dynlibsrc
/usr/share/doc/wise2-2.2.0/README
/usr/share/doc/wise2-2.2.0/docs/README
/usr/share/doc/wise2-2.2.0/docs/apiend.tex
/usr/share/doc/wise2-2.2.0/docs/appendix.tex
/usr/share/doc/wise2-2.2.0/docs/dynamite.tex
/usr/share/doc/wise2-2.2.0/docs/genewise21.eps
/usr/share/doc/wise2-2.2.0/docs/genewise6.eps
/usr/share/doc/wise2-2.2.0/docs/gettex.pl
/usr/share/doc/wise2-2.2.0/docs/makefile
/usr/share/doc/wise2-2.2.0/docs/wise2.tex
/usr/share/doc/wise2-2.2.0/docs/wise2api.tex
/usr/share/doc/wise2-2.2.0/docs/wise3arch.tex
/usr/share/doc/wise2-2.2.0/test_data/README
/usr/share/doc/wise2-2.2.0/test_data/db.hmm
/usr/share/doc/wise2-2.2.0/test_data/hn_est.fa
/usr/share/doc/wise2-2.2.0/test_data/human.genomic
/usr/share/doc/wise2-2.2.0/test_data/keratin_intron.human
/usr/share/doc/wise2-2.2.0/test_data/keratin_intron.mouse
/usr/share/doc/wise2-2.2.0/test_data/pep.fa
/usr/share/doc/wise2-2.2.0/test_data/road.pep
/usr/share/doc/wise2-2.2.0/test_data/rrm.HMM
/usr/share/doc/wise2-2.2.0/test_data/vav.dna
/usr/share/doc/wise2-2.2.0/test_data/xeno.cdna
/usr/share/doc/wise2-2.2.0/test_data/xeno.pep
/usr/share/wise2/BLOSUM30.bla
/usr/share/wise2/BLOSUM45.bla
/usr/share/wise2/BLOSUM62.bla
/usr/share/wise2/BLOSUM80.bla
/usr/share/wise2/aa.rnd
/usr/share/wise2/blosum30.bla
/usr/share/wise2/blosum62.bla
/usr/share/wise2/cb.tmf
/usr/share/wise2/codon.table
/usr/share/wise2/gene.stat
/usr/share/wise2/gon120.bla
/usr/share/wise2/gon160.bla
/usr/share/wise2/gon200.bla
/usr/share/wise2/gon250.bla
/usr/share/wise2/gon350.bla
/usr/share/wise2/human.gf
/usr/share/wise2/human.gp
/usr/share/wise2/human.stats
/usr/share/wise2/idenity.bla
/usr/share/wise2/methods
/usr/share/wise2/pb.gf
/usr/share/wise2/pombe.gf
/usr/share/wise2/tm.pri
/usr/share/wise2/wise.2
/usr/share/wise2/wise.per
/usr/share/wise2/worm.gf

Changelog

2009-07-27 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.0-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
2009-07-16 - Alex Lancaster <alexlan[AT]fedoraproject org> - 2.2.0-6
- Add -D_POSIX_C_SOURCE=200112L to CFLAGS as a workaround to fix FTBFS (#511627)
2009-02-25 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.0-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild
2008-02-09 - Alex Lancaster <alexlan[AT]fedoraproject org> - 2.2.0-4
- rebuilt for GCC 4.3 as requested by Fedora Release Engineering
2007-08-16 - Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-3
- Clarify license as BSD and GPLv2+
2007-04-12 - Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-2
- Pass $RPM_OPT_FLAGS to compiler as per suggestion from Ralf Corsepius.
2007-04-11 - Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-1
- Initial Fedora package.

See Also

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