pysam-0.1.2-2.sdl6.i686.rpm


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Description

pysam - Python interface for the SAM/BAM sequence alignment and mapping format

Property Value
Distribution CentOS 6
Repository PUIAS Computational i386
Package name pysam
Package version 0.1.2
Package release 2.sdl6
Package architecture i686
Package type rpm
Installed size 371.70 KB
Download size 142.77 KB
Official Mirror springdale.math.ias.edu
Pysam is a python module for reading and manipulating Samfiles. It's a
lightweight wrapper of the samtools C-API. Pysam also includes an interface
for tabix.

Alternatives

Package Version Architecture Repository
pysam-0.1.2-2.sdl6.x86_64.rpm 0.1.2 x86_64 PUIAS Computational
pysam - - -

Requires

Name Value
libc.so.6(GLIBC_2.4) -
libpthread.so.0 -
libpthread.so.0(GLIBC_2.0) -
libpython2.6.so.1.0 -
libz.so.1 -
libz.so.1(ZLIB_1.2.2) -
python(abi) = 2.6
rtld(GNU_HASH) -

Provides

Name Value
csamtools.so -
pysam = 0.1.2-2.sdl6
pysam(x86-32) = 0.1.2-2.sdl6

Download

Type URL
Binary Package pysam-0.1.2-2.sdl6.i686.rpm
Source Package pysam-0.1.2-2.sdl6.src.rpm

Install Howto

  1. Download the latest puias-computational rpm from
    http://springdale.math.ias.edu/data/puias/computational/6/i386/
  2. Install puias-computational rpm:
    # rpm -Uvh puias-computational*rpm
  3. Install pysam rpm package:
    # yum install pysam

Files

Path
/usr/lib/python2.6/site-packages/pysam-0.1.2-py2.6.egg-info
/usr/lib/python2.6/site-packages/pysam/Pileup.py
/usr/lib/python2.6/site-packages/pysam/Pileup.pyc
/usr/lib/python2.6/site-packages/pysam/Pileup.pyo
/usr/lib/python2.6/site-packages/pysam/__init__.py
/usr/lib/python2.6/site-packages/pysam/__init__.pyc
/usr/lib/python2.6/site-packages/pysam/__init__.pyo
/usr/lib/python2.6/site-packages/pysam/csamtools.so
/usr/share/doc/pysam-0.1.2/COPYING
/usr/share/doc/pysam-0.1.2/INSTALL
/usr/share/doc/pysam-0.1.2/KNOWN_BUGS
/usr/share/doc/pysam-0.1.2/MANIFEST.in
/usr/share/doc/pysam-0.1.2/PKG-INFO
/usr/share/doc/pysam-0.1.2/THANKS

Changelog

2013-07-11 - Josko Plazonic <plazonic@math.princeton.edu> 0.1.2-1
- account for bwa 0.5.9 differences
2013-05-31 - Josko Plazonic <plazonic@math.princeton.edu> 0.1.2-1
- initial build

See Also

Package Description
pyserial27-2.6-3.sdl6.noarch.rpm Python serial port access library
pytest-2.3.4-1.sdl6.noarch.rpm Simple powerful testing with Python
pytest27-2.6.4-1.sdl6.noarch.rpm Simple powerful testing with Python
python-AppTools-4.2.0-1.sdl6.noarch.rpm Enthough Tool Suite Application Tools
python-AppTools-doc-4.2.0-1.sdl6.noarch.rpm Documentation for python-AppTools
python-Bottleneck-0.6.0-1.sdl6.i686.rpm Collection of fast NumPy array functions written in Cython
python-Bottleneck-doc-0.6.0-1.sdl6.noarch.rpm Documentation files for python-Bottleneck
python-HTSeq-0.5.4p5-1.sdl6.i686.rpm A framework to process and analyze data from high-throughput sequencing (HTS) assays
python-Traits-4.3.0-1.sdl6.i686.rpm Explicitly typed attributes for Python
python-amqp-1.4.9-1.sdl6.noarch.rpm Low-level AMQP client for Python (fork of amqplib)
python-amqp-doc-1.4.9-1.sdl6.noarch.rpm Documentation for python-amqp
python-anyjson-0.3.3-4.sdl6.noarch.rpm Wraps the best available JSON implementation available
python-ase-3.10.0-15.sdl6.noarch.rpm Atomic Simulation Environment
python-basemap-0.99.4-10.puias6.i686.rpm Plots data on map projections (with continental and political boundaries)
python-basemap-data-0.99.4-2.puias6.noarch.rpm Data for python-basemap
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