pbcore-0.8.0-1.sdl6.noarch.rpm


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Description

pbcore - A Python library for reading and writing PacBio data files

Property Value
Distribution CentOS 6
Repository PUIAS Computational i386
Package name pbcore
Package version 0.8.0
Package release 1.sdl6
Package architecture noarch
Package type rpm
Installed size 7.24 MB
Download size 3.81 MB
Official Mirror springdale.math.ias.edu
The pbcore package provides Python APIs for interacting with PacBio data
files and writing bioinformatics applications.

Alternatives

Package Version Architecture Repository
pbcore-0.8.0-1.sdl6.noarch.rpm 0.8.0 noarch PUIAS Computational
pbcore - - -

Requires

Name Value
numpy27 >= 1.6.0
python(abi) = 2.7

Provides

Name Value
pbcore = 0.8.0-1.sdl6

Download

Type URL
Binary Package pbcore-0.8.0-1.sdl6.noarch.rpm
Source Package pbcore-0.8.0-1.sdl6.src.rpm

Install Howto

  1. Download latest puias-computational rpm from
    http://springdale.math.ias.edu/data/puias/computational/6/i386/
  2. Install puias-computational rpm:
    # rpm -Uvh puias-computational*rpm
  3. Install pbcore rpm package:
    # yum install pbcore

Files

Path
/usr/lib/python2.7/site-packages/pbcore/__init__.py
/usr/lib/python2.7/site-packages/pbcore/__init__.pyc
/usr/lib/python2.7/site-packages/pbcore/__init__.pyo
/usr/lib/python2.7/site-packages/pbcore-0.8.0-py2.7.egg-info/PKG-INFO
/usr/lib/python2.7/site-packages/pbcore-0.8.0-py2.7.egg-info/SOURCES.txt
/usr/lib/python2.7/site-packages/pbcore-0.8.0-py2.7.egg-info/dependency_links.txt
/usr/lib/python2.7/site-packages/pbcore-0.8.0-py2.7.egg-info/not-zip-safe
/usr/lib/python2.7/site-packages/pbcore-0.8.0-py2.7.egg-info/requires.txt
/usr/lib/python2.7/site-packages/pbcore-0.8.0-py2.7.egg-info/top_level.txt
/usr/lib/python2.7/site-packages/pbcore/data/1.4_bas_files.fofn
/usr/lib/python2.7/site-packages/pbcore/data/2.0_bax_files.fofn
/usr/lib/python2.7/site-packages/pbcore/data/2.1_bax_files.fofn
/usr/lib/python2.7/site-packages/pbcore/data/2.1_ccs_files.fofn
/usr/lib/python2.7/site-packages/pbcore/data/Fluidigm_human_amplicons.fasta
/usr/lib/python2.7/site-packages/pbcore/data/Fluidigm_human_amplicons.fasta.fai
/usr/lib/python2.7/site-packages/pbcore/data/Fluidigm_human_amplicons_tiny.fasta
/usr/lib/python2.7/site-packages/pbcore/data/__init__.py
/usr/lib/python2.7/site-packages/pbcore/data/__init__.pyc
/usr/lib/python2.7/site-packages/pbcore/data/__init__.pyo
/usr/lib/python2.7/site-packages/pbcore/data/aligned_reads_1.cmp.h5
/usr/lib/python2.7/site-packages/pbcore/data/gff_example1.gff3
/usr/lib/python2.7/site-packages/pbcore/data/m110818_075520_42141_c100129202555500000315043109121112_s1_p0.bas.h5
/usr/lib/python2.7/site-packages/pbcore/data/m110818_075520_42141_c100129202555500000315043109121112_s2_p0.bas.h5
/usr/lib/python2.7/site-packages/pbcore/data/m130522_092457_42208_c100497142550000001823078008081323_s1_p0.1.bax.h5
/usr/lib/python2.7/site-packages/pbcore/data/m130522_092457_42208_c100497142550000001823078008081323_s1_p0.2.bax.h5
/usr/lib/python2.7/site-packages/pbcore/data/m130522_092457_42208_c100497142550000001823078008081323_s1_p0.3.bax.h5
/usr/lib/python2.7/site-packages/pbcore/data/m130522_092457_42208_c100497142550000001823078008081323_s1_p0.bas.h5
/usr/lib/python2.7/site-packages/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.1.ccs.h5
/usr/lib/python2.7/site-packages/pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.1.bax.h5
/usr/lib/python2.7/site-packages/pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.2.bax.h5
/usr/lib/python2.7/site-packages/pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.3.bax.h5
/usr/lib/python2.7/site-packages/pbcore/data/m130731_192718_42129_c100564662550000001823085912221321_s1_p0.bas.h5
/usr/lib/python2.7/site-packages/pbcore/deprecated/BasH5IO.py
/usr/lib/python2.7/site-packages/pbcore/deprecated/BasH5IO.pyc
/usr/lib/python2.7/site-packages/pbcore/deprecated/BasH5IO.pyo
/usr/lib/python2.7/site-packages/pbcore/deprecated/ReferenceEntry.py
/usr/lib/python2.7/site-packages/pbcore/deprecated/ReferenceEntry.pyc
/usr/lib/python2.7/site-packages/pbcore/deprecated/ReferenceEntry.pyo
/usr/lib/python2.7/site-packages/pbcore/deprecated/__init__.py
/usr/lib/python2.7/site-packages/pbcore/deprecated/__init__.pyc
/usr/lib/python2.7/site-packages/pbcore/deprecated/__init__.pyo
/usr/lib/python2.7/site-packages/pbcore/io/BarcodeH5Reader.py
/usr/lib/python2.7/site-packages/pbcore/io/BarcodeH5Reader.pyc
/usr/lib/python2.7/site-packages/pbcore/io/BarcodeH5Reader.pyo
/usr/lib/python2.7/site-packages/pbcore/io/BasH5IO.py
/usr/lib/python2.7/site-packages/pbcore/io/BasH5IO.pyc
/usr/lib/python2.7/site-packages/pbcore/io/BasH5IO.pyo
/usr/lib/python2.7/site-packages/pbcore/io/CmpH5IO.py
/usr/lib/python2.7/site-packages/pbcore/io/CmpH5IO.pyc
/usr/lib/python2.7/site-packages/pbcore/io/CmpH5IO.pyo
/usr/lib/python2.7/site-packages/pbcore/io/FastaIO.py
/usr/lib/python2.7/site-packages/pbcore/io/FastaIO.pyc
/usr/lib/python2.7/site-packages/pbcore/io/FastaIO.pyo
/usr/lib/python2.7/site-packages/pbcore/io/FastqIO.py
/usr/lib/python2.7/site-packages/pbcore/io/FastqIO.pyc
/usr/lib/python2.7/site-packages/pbcore/io/FastqIO.pyo
/usr/lib/python2.7/site-packages/pbcore/io/FofnIO.py
/usr/lib/python2.7/site-packages/pbcore/io/FofnIO.pyc
/usr/lib/python2.7/site-packages/pbcore/io/FofnIO.pyo
/usr/lib/python2.7/site-packages/pbcore/io/GffIO.py
/usr/lib/python2.7/site-packages/pbcore/io/GffIO.pyc
/usr/lib/python2.7/site-packages/pbcore/io/GffIO.pyo
/usr/lib/python2.7/site-packages/pbcore/io/__init__.py
/usr/lib/python2.7/site-packages/pbcore/io/__init__.pyc
/usr/lib/python2.7/site-packages/pbcore/io/__init__.pyo
/usr/lib/python2.7/site-packages/pbcore/io/_utils.py
/usr/lib/python2.7/site-packages/pbcore/io/_utils.pyc
/usr/lib/python2.7/site-packages/pbcore/io/_utils.pyo
/usr/lib/python2.7/site-packages/pbcore/io/base.py
/usr/lib/python2.7/site-packages/pbcore/io/base.pyc
/usr/lib/python2.7/site-packages/pbcore/io/base.pyo
/usr/lib/python2.7/site-packages/pbcore/io/rangeQueries.py
/usr/lib/python2.7/site-packages/pbcore/io/rangeQueries.pyc
/usr/lib/python2.7/site-packages/pbcore/io/rangeQueries.pyo
/usr/lib/python2.7/site-packages/pbcore/model/__init__.py
/usr/lib/python2.7/site-packages/pbcore/model/__init__.pyc
/usr/lib/python2.7/site-packages/pbcore/model/__init__.pyo
/usr/lib/python2.7/site-packages/pbcore/util/Process.py
/usr/lib/python2.7/site-packages/pbcore/util/Process.pyc
/usr/lib/python2.7/site-packages/pbcore/util/Process.pyo
/usr/lib/python2.7/site-packages/pbcore/util/ToolRunner.py
/usr/lib/python2.7/site-packages/pbcore/util/ToolRunner.pyc
/usr/lib/python2.7/site-packages/pbcore/util/ToolRunner.pyo
/usr/lib/python2.7/site-packages/pbcore/util/__init__.py
/usr/lib/python2.7/site-packages/pbcore/util/__init__.pyc
/usr/lib/python2.7/site-packages/pbcore/util/__init__.pyo
/usr/share/doc/pbcore-0.8.0/LICENSES.txt
/usr/share/doc/pbcore-0.8.0/README.md
/usr/share/doc/pbcore-0.8.0/html/.buildinfo
/usr/share/doc/pbcore-0.8.0/html/genindex.html
/usr/share/doc/pbcore-0.8.0/html/index.html
/usr/share/doc/pbcore-0.8.0/html/modules.html
/usr/share/doc/pbcore-0.8.0/html/objects.inv
/usr/share/doc/pbcore-0.8.0/html/pbcore.data.html
/usr/share/doc/pbcore-0.8.0/html/pbcore.deprecated.html
/usr/share/doc/pbcore-0.8.0/html/pbcore.html
/usr/share/doc/pbcore-0.8.0/html/pbcore.io.html
/usr/share/doc/pbcore-0.8.0/html/pbcore.model.html
/usr/share/doc/pbcore-0.8.0/html/pbcore.util.html
/usr/share/doc/pbcore-0.8.0/html/py-modindex.html
/usr/share/doc/pbcore-0.8.0/html/search.html
/usr/share/doc/pbcore-0.8.0/html/searchindex.js
/usr/share/doc/pbcore-0.8.0/html/_sources/index.txt
/usr/share/doc/pbcore-0.8.0/html/_sources/modules.txt
/usr/share/doc/pbcore-0.8.0/html/_sources/pbcore.data.txt
/usr/share/doc/pbcore-0.8.0/html/_sources/pbcore.deprecated.txt
/usr/share/doc/pbcore-0.8.0/html/_sources/pbcore.io.txt
/usr/share/doc/pbcore-0.8.0/html/_sources/pbcore.model.txt
/usr/share/doc/pbcore-0.8.0/html/_sources/pbcore.txt
/usr/share/doc/pbcore-0.8.0/html/_sources/pbcore.util.txt
/usr/share/doc/pbcore-0.8.0/html/_static/ajax-loader.gif
/usr/share/doc/pbcore-0.8.0/html/_static/basic.css
/usr/share/doc/pbcore-0.8.0/html/_static/comment-bright.png
/usr/share/doc/pbcore-0.8.0/html/_static/comment-close.png
/usr/share/doc/pbcore-0.8.0/html/_static/comment.png
/usr/share/doc/pbcore-0.8.0/html/_static/default.css
/usr/share/doc/pbcore-0.8.0/html/_static/doctools.js
/usr/share/doc/pbcore-0.8.0/html/_static/down-pressed.png
/usr/share/doc/pbcore-0.8.0/html/_static/down.png
/usr/share/doc/pbcore-0.8.0/html/_static/file.png
/usr/share/doc/pbcore-0.8.0/html/_static/headerGradient.jpg
/usr/share/doc/pbcore-0.8.0/html/_static/jquery.js
/usr/share/doc/pbcore-0.8.0/html/_static/minus.png
/usr/share/doc/pbcore-0.8.0/html/_static/pacbio.css
/usr/share/doc/pbcore-0.8.0/html/_static/pacbioLogo.png
/usr/share/doc/pbcore-0.8.0/html/_static/plus.png
/usr/share/doc/pbcore-0.8.0/html/_static/pygments.css
/usr/share/doc/pbcore-0.8.0/html/_static/searchtools.js
/usr/share/doc/pbcore-0.8.0/html/_static/sidebar.js
/usr/share/doc/pbcore-0.8.0/html/_static/underscore.js
/usr/share/doc/pbcore-0.8.0/html/_static/up-pressed.png
/usr/share/doc/pbcore-0.8.0/html/_static/up.png
/usr/share/doc/pbcore-0.8.0/html/_static/websupport.js

Changelog

2013-01-20 - Josko Plazonic <plazonic@math.princeton.edu> - 0.8.0-1
- initial build

See Also

Package Description
pbs_python-4.3.3-1.sdl6.i686.rpm This package contains the PBS python module
pcre835-8.35-2.sdl6.i686.rpm Perl-compatible regular expression library
pcre835-devel-8.35-2.sdl6.i686.rpm Development files for pcre835
pcre835-static-8.35-2.sdl6.i686.rpm Static library for pcre835
pcre835-tools-8.35-2.sdl6.i686.rpm Auxiliary utilities for pcre835
pdbsql-3.17-1.puias6.noarch.rpm PDB files as a relational database
pdfjam-2.08-1.puias6.noarch.rpm Utilities for joining, rotating and aligning PDFs
pdsh-2.27-1.1.puias6.i686.rpm High-performance parallel remote shell utility
pdtoolkit-doc-3.17-1.puias6.noarch.rpm Documentation for PDT
perfsuite-1.1.4-1.12.sdl6.i686.rpm Collection of tools for software performance analysis
perfsuite-devel-1.1.4-1.12.sdl6.i686.rpm Software Development Kit for perfsuite
perl-Archive-Any-0.0932-2.puias6.noarch.rpm Single interface to deal with file archives
perl-Array-Diff-0.05002-5.puias6.noarch.rpm Diff two arrays
perl-Array-Utils-0.5-1.sdl6.noarch.rpm Small utils for array manipulation
perl-CPAN-DistnameInfo-0.09-1.puias6.noarch.rpm Extract distribution name and version from a distribution filename
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