bwa-0.5.9-1.sdl6.i686.rpm


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Description

bwa - Burrows-Wheeler Alignment tool

Property Value
Distribution CentOS 6
Repository PUIAS Computational i386
Package name bwa
Package version 0.5.9
Package release 1.sdl6
Package architecture i686
Package type rpm
Installed size 268.71 KB
Download size 123.23 KB
Official Mirror springdale.math.ias.edu
BWA is a program for aligning sequencing reads against a large
reference genome (e.g. human genome). It has two major components, one
for read shorter than 150bp and the other for longer reads.

Alternatives

Package Version Architecture Repository
bwa-0.5.9-1.sdl6.x86_64.rpm 0.5.9 x86_64 PUIAS Computational
bwa-0.5.9-1.el6.x86_64.rpm 0.5.9 x86_64 EPEL
bwa-0.5.9-1.el6.i686.rpm 0.5.9 i686 EPEL
bwa - - -

Requires

Name Value
/usr/bin/perl -
libc.so.6(GLIBC_2.7) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libpthread.so.0 -
libpthread.so.0(GLIBC_2.0) -
libpthread.so.0(GLIBC_2.1) -
libz.so.1 -
perl(Getopt::Std) -
perl(strict) -
perl(warnings) -
rtld(GNU_HASH) -

Provides

Name Value
bwa = 0.5.9-1.sdl6
bwa(x86-32) = 0.5.9-1.sdl6

Download

Type URL
Binary Package bwa-0.5.9-1.sdl6.i686.rpm
Source Package bwa-0.5.9-1.sdl6.src.rpm

Install Howto

  1. Download latest puias-computational rpm from
    http://springdale.math.ias.edu/data/puias/computational/6/i386/
  2. Install puias-computational rpm:
    # rpm -Uvh puias-computational*rpm
  3. Install bwa rpm package:
    # yum install bwa

Files

Path
/usr/bin/bwa
/usr/bin/qualfa2fq.pl
/usr/bin/solid2fastq.pl
/usr/share/doc/bwa-0.5.9/COPYING
/usr/share/doc/bwa-0.5.9/NEWS
/usr/share/man/man1/bwa.1.gz

Changelog

2011-02-17 - Adam Huffman <bloch@verdurin.com> - 0.5.9-1
- new upstream release 0.5.9
2011-02-08 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org>
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
2011-01-05 - Adam Huffman <bloch@verdurin.com> - 0.5.8c-1
- upstream bugfix release
2010-07-20 - Adam Huffman <bloch@verdurin.com> - 0.5.8a-1
- new upstream release
2010-05-29 - Adam Huffman <bloch@verdurin.com> - 0.5.7-2
- fix source URL
- install manpage
- fix cflags
2010-05-28 - Adam Huffman <bloch@verdurin.com> - 0.5.7-1
- initial version

See Also

Package Description
bxh-xcede-tools-1.10.7-2.sdl6.i686.rpm BIAC XML header tools
bxh-xcede-tools-devel-1.10.7-2.sdl6.i686.rpm Development Libraries and Headers for bxh-xcede-tools
cantera-2.0.1-1.sdl6.1.i686.rpm An object-oriented software toolkit for chemical kinetics, thermodynamics, and transport processes
cddlib-devel-094f-9.puias6.i686.rpm Header and static libraries for cddlib
cdecl-2.5-31.i686.rpm Encoding/decoding utilities for C/C++ function declarations
cfitsio-3.360-1.sdl6.i686.rpm Library for manipulating FITS data files
cfitsio-devel-3.360-1.sdl6.i686.rpm Headers required when building programs against cfitsio
cfitsio-docs-3.360-1.sdl6.noarch.rpm Documentation for cfitsio
cfitsio-static-3.360-1.sdl6.i686.rpm Static cfitsio library
cfitsio3240-3.240-2.sdl6.i686.rpm Library for manipulating FITS data files
cfitsio3240-devel-3.240-2.sdl6.i686.rpm Headers required when building programs against cfitsio
cfitsio3240-docs-3.240-2.sdl6.noarch.rpm Documentation for cfitsio
cfitsio3240-static-3.240-2.sdl6.i686.rpm Static cfitsio library
chealpix-2.13a-2.1.sdl6.i686.rpm HEALPix C Bindings Library
chealpix-devel-2.13a-2.1.sdl6.i686.rpm HEALPix C Bindings Library development files
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