fastx_toolkit-galaxy-0.0.13-4.el6.x86_64.rpm


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Description

fastx_toolkit-galaxy - Integrate fastx_toolkit with a local Galaxy installation

Property Value
Distribution CentOS 6
Repository EPEL Testing x86_64
Package name fastx_toolkit-galaxy
Package version 0.0.13
Package release 4.el6
Package architecture x86_64
Package type rpm
Installed size 475.52 KB
Download size 213.23 KB
Official Mirror dl.fedoraproject.org
These files allow the integration of fastx_toolkit with a local
installation of Galaxy (http://main.g2.bx.psu.edu/), a web-based
platform for analyzing multiple alignments, comparing genomic
annotations, profiling metagenomic samples and much more.

Alternatives

Package Version Architecture Repository
fastx_toolkit-galaxy-0.0.13-4.el6.i686.rpm 0.0.13 i686 EPEL Testing
fastx_toolkit-galaxy - - -

Requires

Name Value
fastx_toolkit = 0.0.13-4.el6

Provides

Name Value
fastx_toolkit-galaxy = 0.0.13-4.el6
fastx_toolkit-galaxy(x86-64) = 0.0.13-4.el6

Download

Type URL
Binary Package fastx_toolkit-galaxy-0.0.13-4.el6.x86_64.rpm
Source Package fastx_toolkit-0.0.13-4.el6.src.rpm

Install Howto

  1. Download the latest epel-release rpm from
    http://dl.fedoraproject.org/pub/epel/6/x86_64/
  2. Install epel-release rpm:
    # rpm -Uvh epel-release*rpm
  3. Install fastx_toolkit-galaxy rpm package:
    # yum --enablerepo=epel-testing install fastx_toolkit-galaxy

Files

Path
/usr/share/fastx_toolkit/
/usr/share/fastx_toolkit/galaxy/Makefile
/usr/share/fastx_toolkit/galaxy/README
/usr/share/fastx_toolkit/galaxy/fastx_toolkit_conf.xml
/usr/share/fastx_toolkit/galaxy/static/Makefile
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/Makefile
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/barcode_splitter_output_example.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fasta_clipping_histogram_1.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fasta_clipping_histogram_2.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fasta_clipping_histogram_3.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fasta_clipping_histogram_4.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_nucleotides_distribution_1.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_nucleotides_distribution_2.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_nucleotides_distribution_3.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_nucleotides_distribution_4.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_nucleotides_distribution_line_graph.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_quality_boxplot_1.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_quality_boxplot_2.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastq_quality_boxplot_3.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastx_clipper_example.png
/usr/share/fastx_toolkit/galaxy/static/fastx_icons/fastx_clipper_illustration.png
/usr/share/fastx_toolkit/galaxy/test-data/Makefile
/usr/share/fastx_toolkit/galaxy/test-data/fasta_collapser1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fasta_collapser1.out
/usr/share/fastx_toolkit/galaxy/test-data/fasta_formatter1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fasta_formatter1.out
/usr/share/fastx_toolkit/galaxy/test-data/fasta_formatter2.out
/usr/share/fastx_toolkit/galaxy/test-data/fasta_nuc_changer1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fasta_nuc_changer1.out
/usr/share/fastx_toolkit/galaxy/test-data/fasta_nuc_changer2.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fasta_nuc_changer2.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv1a.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv2.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv2.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_conv2n.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_filter1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_filter1a.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_qual_filter1b.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_stats1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastq_stats1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_to_fasta1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastq_to_fasta1a.out
/usr/share/fastx_toolkit/galaxy/test-data/fastq_to_fasta1b.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_artifacts1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fastx_artifacts1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_artifacts2.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastx_artifacts2.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_barcode_splitter1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastx_barcode_splitter1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_barcode_splitter1.txt
/usr/share/fastx_toolkit/galaxy/test-data/fastx_clipper1.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastx_clipper1a.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_rev_comp1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fastx_rev_comp2.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastx_reverse_complement1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_reverse_complement2.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_trimmer1.fasta
/usr/share/fastx_toolkit/galaxy/test-data/fastx_trimmer1.out
/usr/share/fastx_toolkit/galaxy/test-data/fastx_trimmer2.fastq
/usr/share/fastx_toolkit/galaxy/test-data/fastx_trimmer2.out
/usr/share/fastx_toolkit/galaxy/tool-data/Makefile
/usr/share/fastx_toolkit/galaxy/tool-data/fastx_clipper_sequences.txt
/usr/share/fastx_toolkit/galaxy/tools/Makefile
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/Makefile
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fasta_clipping_histogram.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fasta_formatter.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fasta_nucleotide_changer.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastq_masker.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastq_quality_boxplot.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastq_quality_converter.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastq_quality_filter.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastq_quality_trimmer.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastq_to_fasta.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_artifacts_filter.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_barcode_splitter.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_clipper.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_collapser.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_nucleotides_distribution.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_nucleotides_distribution_line.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_quality_statistics.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_renamer.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_reverse_complement.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_trimmer.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_trimmer_from_end.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/fastx_uncollapser.xml
/usr/share/fastx_toolkit/galaxy/tools/cshl_custom_fastx_toolkit/seqid_uncollapser.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/Makefile
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fasta_clipping_histogram.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fasta_formatter.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fasta_nucleotide_changer.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_masker.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_quality_boxplot.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_quality_converter.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_quality_filter.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_quality_trimmer.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastq_to_fasta.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_artifacts_filter.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_barcode_splitter.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_clipper.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_collapser.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_nucleotides_distribution.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_nucleotides_distribution_line.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_quality_statistics.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_renamer.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_reverse_complement.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_trimmer.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_trimmer_from_end.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/fastx_uncollapser.xml
/usr/share/fastx_toolkit/galaxy/tools/fastx_toolkit/seqid_uncollapser.xml

Changelog

See fastx_toolkit-0.0.13-4.el6.x86_64.rpm changelog.

See Also

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gdb-heap-0.5-9.1.el6.x86_64.rpm Extensions to gdb for debugging dynamic memory allocation
geany-plugins-addons-1.24-2.el6.x86_64.rpm Miscellaneous Addons for Geany
geany-plugins-autoclose-1.24-2.el6.x86_64.rpm Intellectually helps you to write code
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geany-plugins-common-1.24-2.el6.x86_64.rpm Common files used by all geany plugins
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geany-plugins-defineformat-1.24-2.el6.x86_64.rpm Write multiline defines with aligned backslash
geany-plugins-devhelp-1.24-2.el6.x86_64.rpm API documentation browser in Geany
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