python-biopython-1.51-1.PU_IAS.5.x86_64.rpm


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Description

python-biopython - Python tools for computational molecular biology

Property Value
Distribution CentOS 5
Repository PUIAS Server x86_64
Package name python-biopython
Package version 1.51
Package release 1.PU_IAS.5
Package architecture x86_64
Package type rpm
Installed size 14.65 MB
Download size 4.75 MB
Official Mirror springdale.math.ias.edu
A set of freely available Python tools for computational molecular
biology.

Alternatives

Package Version Architecture Repository
python-biopython-1.51-1.PU_IAS.5.i386.rpm 1.51 i386 PUIAS Server
python-biopython - - -

Requires

Name Value
MySQL-python -
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libpthread.so.0()(64bit) -
numpy -
python(abi) = 2.4
python-psycopg2 -
python-reportlab -
rtld(GNU_HASH) -
wise2 -

Provides

Name Value
DNAUtils.so()(64bit) -
MMCIFlex.so()(64bit) -
_CKDTree.so()(64bit) -
_pwm.so()(64bit) -
cMarkovModel.so()(64bit) -
clistfns.so()(64bit) -
cluster.so()(64bit) -
cmathfns.so()(64bit) -
cnexus.so()(64bit) -
cpairwise2.so()(64bit) -
cstringfns.so()(64bit) -
python-biopython = 1.51-1.PU_IAS.5
trie.so()(64bit) -

Download

Type URL
Binary Package python-biopython-1.51-1.PU_IAS.5.x86_64.rpm
Source Package python-biopython-1.51-1.PU_IAS.5.src.rpm

Install Howto

  1. Create the repository config file /etc/yum.repos.d/puias-server.repo:
    [puias-server]
    name=PUIAS Server
    baseurl=http://springdale.math.ias.edu/data/puias/5/en/os/x86_64/ServerAddons/
    enabled=1
    gpgcheck=0
    
  2. Install python-biopython rpm package:
    # yum install python-biopython

Files

Path
/usr/lib64/python2.4/site-packages/Bio/DocSQL.py
/usr/lib64/python2.4/site-packages/Bio/DocSQL.pyc
/usr/lib64/python2.4/site-packages/Bio/DocSQL.pyo
/usr/lib64/python2.4/site-packages/Bio/EZRetrieve.py
/usr/lib64/python2.4/site-packages/Bio/EZRetrieve.pyc
/usr/lib64/python2.4/site-packages/Bio/EZRetrieve.pyo
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Changelog

2009-08-18 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.51-1
- Update to upstream 1.51
- Drop mx {Build}Requires, no longer used upstream
- Remove Martel modules, no longer distributed upstream
- Add flex to BuildRequires, patch setup to build
Bio.PDB.mmCIF.MMCIFlex as per upstream:
http://bugzilla.open-bio.org/show_bug.cgi?id=2619
2009-07-26 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.49-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
2009-02-26 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.49-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild
2008-12-01 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.49-1
- Update to latest upstream (1.49) uses numpy and new API for psycopg2
- [Build]Requires python-numeric -> numpy 
- [Build]Requires python-psycopg -> python-psycopg2
- Remove interactive question hack, no longer needed
2008-11-30 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.48-3
- Temporarily disable python-psycopg dependency until it is rebuilt
for Python 2.6
2008-11-29 - Ignacio Vazquez-Abrams <ivazqueznet+rpm@gmail.com> - 1.48-2
- Rebuild for Python 2.6
2008-09-29 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.48-1
- Update to latest upstream (1.48)
2008-07-04 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.47-1
- Update to latest upstream (1.47)
2008-03-23 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.45-1
- Update to latest upstream (1.45)
2008-02-09 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.44-4
- rebuilt for GCC 4.3 as requested by Fedora Release Engineering

See Also

Package Description
python-matplotlib-0.99.1.2-1.PU_IAS.5.x86_64.rpm Python plotting library
python-matplotlib-tk-0.99.1.2-1.PU_IAS.5.x86_64.rpm Tk backend for python-matplotlib
python-nose-0.10.3-1.PU_IAS.5.noarch.rpm A discovery-based unittest extension for Python
python-numarray-1.5.2-1.PU_IAS.5.x86_64.rpm Python array manipulation and computational library
python-psycopg2-2.0.11-1.PU_IAS.5.x86_64.rpm A PostgreSQL database adapter for Python
python-psycopg2-doc-2.0.11-1.PU_IAS.5.x86_64.rpm Documentation for psycopg python PostgreSQL database adapter
python-reportlab-2.0-2.PU_IAS.5.noarch.rpm Python PDF generation library
python-reportlab-docs-2.0-2.PU_IAS.5.noarch.rpm Documentation files for python-reportlab
pytz-2006p-1.PU_IAS.5.noarch.rpm World Timezone Definitions for Python
pyxdg-0.16-1.PU_IAS.5.noarch.rpm Python library to access freedesktop.org standards
qhull-2003.1-6.PU_IAS.5.x86_64.rpm General dimension convex hull programs
qhull-devel-2003.1-6.PU_IAS.5.x86_64.rpm Development files for qhull
recode-3.6-22.PU_IAS.5.x86_64.rpm Conversion between character sets and surfaces
recode-devel-3.6-22.PU_IAS.5.x86_64.rpm Header files and static libraries for development using recode
rlog-1.3.7-3.PU_IAS.5.x86_64.rpm Runtime Logging for C++
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