wise2-2.2.0-4.PU_IAS.5.i386.rpm


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Description

wise2 - Tools for comparison of biopolymers

Distribution: CentOS 5
Repository: PUIAS Server i386
Package name: wise2
Package version: 2.2.0
Package release: 4.PU_IAS.5
Package architecture: i386
Package type: rpm
Installed size: 7.23 MB
Download size: 2.51 MB
Official Mirror: springdale.math.ias.edu
Wise2 is a package focused on comparisons of biopolymers, commonly DNA sequence and protein sequence. A strength of Wise2 is the comparison of DNA sequence at the level of its protein translation. This comparison allows the simultaneous prediction of gene structure with homology based alignment.

Alternatives

Provides

  • config(wise2) = 2.2.0-4.PU_IAS.5
  • wise2 = 2.2.0-4.PU_IAS.5

    Download

    Install Howto

    1. Create the repository config file /etc/yum.repos.d/puias-server.repo:
      [puias-server]
      name=PUIAS Server
      baseurl=http://springdale.math.ias.edu/data/puias/5/en/os/i386/ServerAddons/
      enabled=1
      gpgcheck=0
      
    2. Install wise2 rpm package:
      # yum install wise2

    Files

    • /etc/profile.d/wise2.csh
    • /etc/profile.d/wise2.sh
    • /usr/bin/dba
    • /usr/bin/dnal
    • /usr/bin/estwise
    • /usr/bin/estwisedb
    • /usr/bin/genewise
    • /usr/bin/genewisedb
    • /usr/bin/genomewise
    • /usr/bin/psw
    • /usr/bin/pswdb
    • /usr/share/doc/wise2-2.2.0/INSTALL
    • /usr/share/doc/wise2-2.2.0/LICENSE
    • /usr/share/doc/wise2-2.2.0/LICENSE.GPL
    • /usr/share/doc/wise2-2.2.0/LICENSE.base
    • /usr/share/doc/wise2-2.2.0/LICENSE.dyc
    • /usr/share/doc/wise2-2.2.0/LICENSE.dynlibsrc
    • /usr/share/doc/wise2-2.2.0/README
    • /usr/share/doc/wise2-2.2.0/docs/README
    • /usr/share/doc/wise2-2.2.0/docs/apiend.tex
    • /usr/share/doc/wise2-2.2.0/docs/appendix.tex
    • /usr/share/doc/wise2-2.2.0/docs/dynamite.tex
    • /usr/share/doc/wise2-2.2.0/docs/genewise21.eps
    • /usr/share/doc/wise2-2.2.0/docs/genewise6.eps
    • /usr/share/doc/wise2-2.2.0/docs/gettex.pl
    • /usr/share/doc/wise2-2.2.0/docs/makefile
    • /usr/share/doc/wise2-2.2.0/docs/wise2.tex
    • /usr/share/doc/wise2-2.2.0/docs/wise2api.tex
    • /usr/share/doc/wise2-2.2.0/docs/wise3arch.tex
    • /usr/share/doc/wise2-2.2.0/test_data/README
    • /usr/share/doc/wise2-2.2.0/test_data/db.hmm
    • /usr/share/doc/wise2-2.2.0/test_data/hn_est.fa
    • /usr/share/doc/wise2-2.2.0/test_data/human.genomic
    • /usr/share/doc/wise2-2.2.0/test_data/keratin_intron.human
    • /usr/share/doc/wise2-2.2.0/test_data/keratin_intron.mouse
    • /usr/share/doc/wise2-2.2.0/test_data/pep.fa
    • /usr/share/doc/wise2-2.2.0/test_data/road.pep
    • /usr/share/doc/wise2-2.2.0/test_data/rrm.HMM
    • /usr/share/doc/wise2-2.2.0/test_data/vav.dna
    • /usr/share/doc/wise2-2.2.0/test_data/xeno.cdna
    • /usr/share/doc/wise2-2.2.0/test_data/xeno.pep
    • /usr/share/wise2/BLOSUM30.bla
    • /usr/share/wise2/BLOSUM45.bla
    • /usr/share/wise2/BLOSUM62.bla
    • /usr/share/wise2/BLOSUM80.bla
    • /usr/share/wise2/aa.rnd
    • /usr/share/wise2/blosum30.bla
    • /usr/share/wise2/blosum62.bla
    • /usr/share/wise2/cb.tmf
    • /usr/share/wise2/codon.table
    • /usr/share/wise2/gene.stat
    • /usr/share/wise2/gon120.bla
    • /usr/share/wise2/gon160.bla
    • /usr/share/wise2/gon200.bla
    • /usr/share/wise2/gon250.bla
    • /usr/share/wise2/gon350.bla
    • /usr/share/wise2/human.gf
    • /usr/share/wise2/human.gp
    • /usr/share/wise2/human.stats
    • /usr/share/wise2/idenity.bla
    • /usr/share/wise2/methods
    • /usr/share/wise2/pb.gf
    • /usr/share/wise2/pombe.gf
    • /usr/share/wise2/tm.pri
    • /usr/share/wise2/wise.2
    • /usr/share/wise2/wise.per
    • /usr/share/wise2/worm.gf

    Changelog

    2008-02-09 - Alex Lancaster <alexlan[AT]fedoraproject org> - 2.2.0-4 - rebuilt for GCC 4.3 as requested by Fedora Release Engineering

    2007-08-16 - Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-3 - Clarify license as BSD and GPLv2+

    2007-04-12 - Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-2 - Pass $RPM_OPT_FLAGS to compiler as per suggestion from Ralf Corsepius.

    2007-04-11 - Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-1 - Initial Fedora package.

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