wise2-2.2.0-4.PU_IAS.5.i386.rpm


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Description

wise2 - Tools for comparison of biopolymers

Property Value
Distribution CentOS 5
Repository PUIAS Server i386
Package name wise2
Package version 2.2.0
Package release 4.PU_IAS.5
Package architecture i386
Package type rpm
Installed size 7.23 MB
Download size 2.51 MB
Official Mirror springdale.math.ias.edu
Wise2 is a package focused on comparisons of biopolymers, commonly DNA
sequence and protein sequence.  A strength of Wise2 is the
comparison of DNA sequence at the level of its protein
translation. This comparison allows the simultaneous prediction of
gene structure with homology based alignment.

Alternatives

Package Version Architecture Repository
wise2-2.2.0-4.PU_IAS.5.x86_64.rpm 2.2.0 x86_64 PUIAS Server
wise2 - - -

Requires

Name Value
config(wise2) = 2.2.0-4.PU_IAS.5
libc.so.6 -
libc.so.6(GLIBC_2.0) -
libc.so.6(GLIBC_2.1) -
libc.so.6(GLIBC_2.3) -
libc.so.6(GLIBC_2.3.4) -
libc.so.6(GLIBC_2.4) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
rtld(GNU_HASH) -

Provides

Name Value
config(wise2) = 2.2.0-4.PU_IAS.5
wise2 = 2.2.0-4.PU_IAS.5

Download

Type URL
Binary Package wise2-2.2.0-4.PU_IAS.5.i386.rpm
Source Package wise2-2.2.0-4.PU_IAS.5.src.rpm

Install Howto

  1. Create the repository config file /etc/yum.repos.d/puias-server.repo:
    [puias-server]
    name=PUIAS Server
    baseurl=http://springdale.math.ias.edu/data/puias/5/en/os/i386/ServerAddons/
    enabled=1
    gpgcheck=0
    
  2. Install wise2 rpm package:
    # yum install wise2

Files

Path
/etc/profile.d/wise2.csh
/etc/profile.d/wise2.sh
/usr/bin/dba
/usr/bin/dnal
/usr/bin/estwise
/usr/bin/estwisedb
/usr/bin/genewise
/usr/bin/genewisedb
/usr/bin/genomewise
/usr/bin/psw
/usr/bin/pswdb
/usr/share/doc/wise2-2.2.0/INSTALL
/usr/share/doc/wise2-2.2.0/LICENSE
/usr/share/doc/wise2-2.2.0/LICENSE.GPL
/usr/share/doc/wise2-2.2.0/LICENSE.base
/usr/share/doc/wise2-2.2.0/LICENSE.dyc
/usr/share/doc/wise2-2.2.0/LICENSE.dynlibsrc
/usr/share/doc/wise2-2.2.0/README
/usr/share/doc/wise2-2.2.0/docs/README
/usr/share/doc/wise2-2.2.0/docs/apiend.tex
/usr/share/doc/wise2-2.2.0/docs/appendix.tex
/usr/share/doc/wise2-2.2.0/docs/dynamite.tex
/usr/share/doc/wise2-2.2.0/docs/genewise21.eps
/usr/share/doc/wise2-2.2.0/docs/genewise6.eps
/usr/share/doc/wise2-2.2.0/docs/gettex.pl
/usr/share/doc/wise2-2.2.0/docs/makefile
/usr/share/doc/wise2-2.2.0/docs/wise2.tex
/usr/share/doc/wise2-2.2.0/docs/wise2api.tex
/usr/share/doc/wise2-2.2.0/docs/wise3arch.tex
/usr/share/doc/wise2-2.2.0/test_data/README
/usr/share/doc/wise2-2.2.0/test_data/db.hmm
/usr/share/doc/wise2-2.2.0/test_data/hn_est.fa
/usr/share/doc/wise2-2.2.0/test_data/human.genomic
/usr/share/doc/wise2-2.2.0/test_data/keratin_intron.human
/usr/share/doc/wise2-2.2.0/test_data/keratin_intron.mouse
/usr/share/doc/wise2-2.2.0/test_data/pep.fa
/usr/share/doc/wise2-2.2.0/test_data/road.pep
/usr/share/doc/wise2-2.2.0/test_data/rrm.HMM
/usr/share/doc/wise2-2.2.0/test_data/vav.dna
/usr/share/doc/wise2-2.2.0/test_data/xeno.cdna
/usr/share/doc/wise2-2.2.0/test_data/xeno.pep
/usr/share/wise2/BLOSUM30.bla
/usr/share/wise2/BLOSUM45.bla
/usr/share/wise2/BLOSUM62.bla
/usr/share/wise2/BLOSUM80.bla
/usr/share/wise2/aa.rnd
/usr/share/wise2/blosum30.bla
/usr/share/wise2/blosum62.bla
/usr/share/wise2/cb.tmf
/usr/share/wise2/codon.table
/usr/share/wise2/gene.stat
/usr/share/wise2/gon120.bla
/usr/share/wise2/gon160.bla
/usr/share/wise2/gon200.bla
/usr/share/wise2/gon250.bla
/usr/share/wise2/gon350.bla
/usr/share/wise2/human.gf
/usr/share/wise2/human.gp
/usr/share/wise2/human.stats
/usr/share/wise2/idenity.bla
/usr/share/wise2/methods
/usr/share/wise2/pb.gf
/usr/share/wise2/pombe.gf
/usr/share/wise2/tm.pri
/usr/share/wise2/wise.2
/usr/share/wise2/wise.per
/usr/share/wise2/worm.gf

Changelog

2008-02-09 - Alex Lancaster <alexlan[AT]fedoraproject org> - 2.2.0-4
- rebuilt for GCC 4.3 as requested by Fedora Release Engineering
2007-08-16 - Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-3
- Clarify license as BSD and GPLv2+
2007-04-12 - Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-2
- Pass $RPM_OPT_FLAGS to compiler as per suggestion from Ralf Corsepius.
2007-04-11 - Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-1
- Initial Fedora package.

See Also

Package Description
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wv-devel-1.2.4-1.PU_IAS.5.i386.rpm MSWord format converter - development files
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x-symbol-emacs-4.51-4.PU_IAS.5.noarch.rpm An Emacs mode providing WYSIWYG features
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x264-devel-0.67.1134-0.3.PU_IAS.5.i386.rpm Development files for the x264 library
xbae-4.60.4-5.PU_IAS.5.i386.rpm Motif matrix, caption and text input widgets
xbae-devel-4.60.4-5.PU_IAS.5.i386.rpm Development files for xbae
xbase-2.0.0-6.PU_IAS.5.i386.rpm XBase compatible database library and tools
xbase-devel-2.0.0-6.PU_IAS.5.i386.rpm XBase development libraries and headers
xdg-utils-1.0.2-4.PU_IAS.5.noarch.rpm Basic desktop integration functions
xforms-1.0.90-8.PU_IAS.5.i386.rpm XForms toolkit library
xforms-devel-1.0.90-8.PU_IAS.5.i386.rpm Development files for the XForms toolkit library
xine-0.99.5-1.PU_IAS.5.i386.rpm Free multimedia player
xine-lib-1.1.16.3-2.PU_IAS.5.i386.rpm Core library of the xine multimedia player
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