samtools0118bv-pysam26_06-0.6-2.el5.x86_64.rpm


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Description

samtools0118bv-pysam26_06 - Python interface for the SAM/BAM sequence alignment and mapping format

Property Value
Distribution CentOS 5
Repository PUIAS Computational x86_64
Package name samtools0118bv-pysam26_06
Package version 0.6
Package release 2.el5
Package architecture x86_64
Package type rpm
Installed size 1.67 MB
Download size 664.40 KB
Official Mirror springdale.math.ias.edu
Pysam is a python module for reading and manipulating Samfiles. It's a
lightweight wrapper of the samtools C-API. Pysam also includes an interface
for tabix.

Alternatives

Package Version Architecture Repository
samtools0118bv-pysam26_06 - - -

Requires

Name Value
environment-modules -
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libpthread.so.0()(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libpython2.6.so.1.0()(64bit) -
libz.so.1()(64bit) -
rtld(GNU_HASH) -
samtools0118bv-libs -

Provides

Name Value
TabProxies.so()(64bit) -
csamtools.so()(64bit) -
ctabix.so()(64bit) -
cvcf.so()(64bit) -
samtools0118bv-pysam26_06 = 0.6-2.el5

Download

Type URL
Binary Package samtools0118bv-pysam26_06-0.6-2.el5.x86_64.rpm
Source Package samtools0118bv-pysam26_06-0.6-2.el5.src.rpm

Install Howto

  1. Create the repository config file /etc/yum.repos.d/puias-computational.repo:
    [puias-computational]
    name=PUIAS Computational
    baseurl=http://springdale.math.ias.edu/data/puias/computational/5/x86_64/
    enabled=1
    gpgcheck=0
    
  2. Install samtools0118bv-pysam26_06 rpm package:
    # yum install samtools0118bv-pysam26_06

Files

Path
/usr/local/samtools/0.1.18bv/pysam26/0.6/TabProxies.so
/usr/local/samtools/0.1.18bv/pysam26/0.6/csamtools.so
/usr/local/samtools/0.1.18bv/pysam26/0.6/ctabix.so
/usr/local/samtools/0.1.18bv/pysam26/0.6/cvcf.so
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/Pileup.py
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/Pileup.pyc
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/Pileup.pyo
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/__init__.py
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/__init__.pyc
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/__init__.pyo
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/namedtuple.py
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/namedtuple.pyc
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/namedtuple.pyo
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/version.py
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/version.pyc
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam/version.pyo
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam-0.6-py2.6.egg-info/PKG-INFO
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam-0.6-py2.6.egg-info/SOURCES.txt
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam-0.6-py2.6.egg-info/dependency_links.txt
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam-0.6-py2.6.egg-info/not-zip-safe
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam-0.6-py2.6.egg-info/requires.txt
/usr/local/samtools/0.1.18bv/pysam26/0.6/pysam-0.6-py2.6.egg-info/top_level.txt
/usr/local/share/Modules/modulefiles/samtools/0.1.18bv/pysam26/0.6
/usr/share/doc/samtools0118bv-pysam26_06-0.6/COPYING
/usr/share/doc/samtools0118bv-pysam26_06-0.6/INSTALL
/usr/share/doc/samtools0118bv-pysam26_06-0.6/KNOWN_BUGS
/usr/share/doc/samtools0118bv-pysam26_06-0.6/MANIFEST.in
/usr/share/doc/samtools0118bv-pysam26_06-0.6/PKG-INFO
/usr/share/doc/samtools0118bv-pysam26_06-0.6/THANKS

Changelog

2013-07-11 - Josko Plazonic <plazonic@math.princeton.edu> 0.1.2-1
- account for bwa 0.5.9 differences
2013-05-31 - Josko Plazonic <plazonic@math.princeton.edu> 0.1.2-1
- initial build

See Also

Package Description
samtools0119-0.1.19-2.2.el5.x86_64.rpm Tools for nucleotide sequence alignments in the SAM format
samtools0119-devel-0.1.19-2.2.el5.x86_64.rpm Header files and libraries for compiling against samtools0119
samtools0119-libs-0.1.19-2.2.el5.x86_64.rpm Libraries for applications using samtools0119
samtools0119-pysam26_075-0.7.5-2.el5.x86_64.rpm Python interface for the SAM/BAM sequence alignment and mapping format
scipy26-0.8.0-4.sdl5.x86_64.rpm Scipy: Scientific Tools for Python
sge-6.1-5.9.PU_IAS.5.x86_64.rpm Sun Grid Engine
sge-common-6.1-5.9.PU_IAS.5.x86_64.rpm Sun Grid Engine common files
sge-docs-6.1-5.9.PU_IAS.5.x86_64.rpm Sun Grid Engine documentation
sge-gui-6.1-5.9.PU_IAS.5.x86_64.rpm Sun Grid Engine graphical management tools
sge-sshdevel-6.1-5.9.PU_IAS.5.x86_64.rpm Sun Grid Engine development files for building custom ssh
sge-suid-6.1-5.9.PU_IAS.5.x86_64.rpm Sun Grid Engine suid executables
slimdata-2.6.4-1.PU_IAS.5.x86_64.rpm Tools and library for reading and writing slim compressed data
slimdata-devel-2.6.4-1.PU_IAS.5.x86_64.rpm Headers required when building programs against getdata
snksu-2.1-1.PU_IAS.5.x86_64.rpm Allow su to root using a secure net key
svgalib-1.9.25-3.sdl5.x86_64.rpm Low-level fullscreen SVGA graphics library
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