samtools0118-pysam26_074-0.7.4-2.el5.x86_64.rpm


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Description

samtools0118-pysam26_074 - Python interface for the SAM/BAM sequence alignment and mapping format

Distribution: CentOS 5
Repository: PUIAS Computational x86_64
Package name: samtools0118-pysam26_074
Package version: 0.7.4
Package release: 2.el5
Package architecture: x86_64
Package type: rpm
Installed size: 2.08 MB
Download size: 757.22 KB
Official Mirror: springdale.math.ias.edu
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

Alternatives

Provides

  • TabProxies.so()(64bit)
  • csamtools.so()(64bit)
  • ctabix.so()(64bit)
  • cvcf.so()(64bit)
  • samtools0118-pysam26_074 = 0.7.4-2.el5

    Install Howto

    1. Create the repository config file /etc/yum.repos.d/puias-computational.repo:
      [puias-computational]
      name=PUIAS Computational
      baseurl=http://springdale.math.ias.edu/data/puias/computational/5/x86_64/
      enabled=1
      gpgcheck=0
      
    2. Install samtools0118-pysam26_074 rpm package:
      # yum install samtools0118-pysam26_074

    Files

    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/Pileup.py
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/Pileup.pyc
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/Pileup.pyo
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/TabProxies.pxd
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/TabProxies.so
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/__init__.py
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/__init__.pyc
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/__init__.pyo
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/csamtools.pxd
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/csamtools.so
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/ctabix.pxd
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/ctabix.so
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/cvcf.pxd
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/cvcf.so
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/namedtuple.py
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/namedtuple.pyc
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/namedtuple.pyo
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/pysam_util.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/version.py
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/version.pyc
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/version.pyo
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam-0.7.4-py2.6.egg-info/PKG-INFO
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam-0.7.4-py2.6.egg-info/SOURCES.txt
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam-0.7.4-py2.6.egg-info/dependency_links.txt
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam-0.7.4-py2.6.egg-info/not-zip-safe
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam-0.7.4-py2.6.egg-info/requires.txt
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam-0.7.4-py2.6.egg-info/top_level.txt
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/__init__.py
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/__init__.pyc
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/__init__.pyo
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/__init__.py
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/__init__.pyc
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/__init__.pyo
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/bam.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/bam2bcf.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/bam_endian.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/bgzf.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/errmod.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/faidx.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/kaln.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/khash.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/klist.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/knetfile.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/kprobaln.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/kseq.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/ksort.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/kstring.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/pysam.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/razf.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/sam.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/sam_header.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/sample.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/bcftools/__init__.py
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/bcftools/__init__.pyc
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/bcftools/__init__.pyo
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/bcftools/bcf.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/bcftools/kmin.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/bcftools/prob1.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/win32/__init__.py
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/win32/__init__.pyc
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/win32/__init__.pyo
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/win32/xcurses.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/win32/zconf.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/samtools/win32/zlib.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/__init__.py
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/__init__.pyc
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/__init__.pyo
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/bam_endian.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/bgzf.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/khash.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/knetfile.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/kseq.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/ksort.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/kstring.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/pysam.h
    • /usr/local/samtools/0.1.18/pysam26/0.7.4/pysam/include/tabix/tabix.h
    • /usr/local/share/Modules/modulefiles/samtools/0.1.18/pysam26/0.7.4
    • /usr/share/doc/samtools0118-pysam26_074-0.7.4/COPYING
    • /usr/share/doc/samtools0118-pysam26_074-0.7.4/INSTALL
    • /usr/share/doc/samtools0118-pysam26_074-0.7.4/KNOWN_BUGS
    • /usr/share/doc/samtools0118-pysam26_074-0.7.4/MANIFEST.in
    • /usr/share/doc/samtools0118-pysam26_074-0.7.4/PKG-INFO
    • /usr/share/doc/samtools0118-pysam26_074-0.7.4/THANKS

    Changelog

    2013-07-11 - Josko Plazonic <plazonic@math.princeton.edu> 0.1.2-1 - account for bwa 0.5.9 differences

    2013-05-31 - Josko Plazonic <plazonic@math.princeton.edu> 0.1.2-1 - initial build

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