samtools0118-0.1.18-2.2.el5.x86_64.rpm


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Description

samtools0118 - Tools for nucleotide sequence alignments in the SAM format

Distribution: CentOS 5
Repository: PUIAS Computational x86_64
Package name: samtools0118
Package version: 0.1.18
Package release: 2.2.el5
Package architecture: x86_64
Package type: rpm
Installed size: 1.02 MB
Download size: 480.28 KB
Official Mirror: springdale.math.ias.edu
SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Alternatives

Provides

  • samtools0118 = 0.1.18-2.2.el5

    Install Howto

    1. Create the repository config file /etc/yum.repos.d/puias-computational.repo:
      [puias-computational]
      name=PUIAS Computational
      baseurl=http://springdale.math.ias.edu/data/puias/computational/5/x86_64/
      enabled=1
      gpgcheck=0
      
    2. Install samtools0118 rpm package:
      # yum install samtools0118

    Files

    • /usr/local/samtools/0.1.18/bin/bcftools
    • /usr/local/samtools/0.1.18/bin/blast2sam.pl
    • /usr/local/samtools/0.1.18/bin/bowtie2sam.pl
    • /usr/local/samtools/0.1.18/bin/export2sam.pl
    • /usr/local/samtools/0.1.18/bin/interpolate_sam.pl
    • /usr/local/samtools/0.1.18/bin/maq2sam-long
    • /usr/local/samtools/0.1.18/bin/maq2sam-short
    • /usr/local/samtools/0.1.18/bin/md5fa
    • /usr/local/samtools/0.1.18/bin/md5sum-lite
    • /usr/local/samtools/0.1.18/bin/novo2sam.pl
    • /usr/local/samtools/0.1.18/bin/psl2sam.pl
    • /usr/local/samtools/0.1.18/bin/razip
    • /usr/local/samtools/0.1.18/bin/sam2vcf.pl
    • /usr/local/samtools/0.1.18/bin/samtools
    • /usr/local/samtools/0.1.18/bin/samtools.pl
    • /usr/local/samtools/0.1.18/bin/seqtk
    • /usr/local/samtools/0.1.18/bin/soap2sam.pl
    • /usr/local/samtools/0.1.18/bin/varfilter.py
    • /usr/local/samtools/0.1.18/bin/varfilter.pyc
    • /usr/local/samtools/0.1.18/bin/varfilter.pyo
    • /usr/local/samtools/0.1.18/bin/vcfutils.pl
    • /usr/local/samtools/0.1.18/bin/wgsim
    • /usr/local/samtools/0.1.18/bin/wgsim_eval.pl
    • /usr/local/samtools/0.1.18/bin/zoom2sam.pl
    • /usr/local/samtools/0.1.18/share/man/man1/samtools.1
    • /usr/share/doc/samtools0118-0.1.18/AUTHORS
    • /usr/share/doc/samtools0118-0.1.18/COPYING
    • /usr/share/doc/samtools0118-0.1.18/ChangeLog
    • /usr/share/doc/samtools0118-0.1.18/INSTALL
    • /usr/share/doc/samtools0118-0.1.18/NEWS
    • /usr/share/doc/samtools0118-0.1.18/README.bcftools
    • /usr/share/doc/samtools0118-0.1.18/bcf.tex
    • /usr/share/doc/samtools0118-0.1.18/examples/00README.txt
    • /usr/share/doc/samtools0118-0.1.18/examples/Makefile
    • /usr/share/doc/samtools0118-0.1.18/examples/bam2bed.c
    • /usr/share/doc/samtools0118-0.1.18/examples/calDepth.c
    • /usr/share/doc/samtools0118-0.1.18/examples/ex1.fa
    • /usr/share/doc/samtools0118-0.1.18/examples/ex1.sam.gz
    • /usr/share/doc/samtools0118-0.1.18/examples/toy.fa
    • /usr/share/doc/samtools0118-0.1.18/examples/toy.sam

    Changelog

    2011-10-26 - Adam Huffman <verdurin@fedoraproject.org> - 0.1.18-2 - make sure new seqtk tool included

    2011-09-06 - Rasmus Ory Nielsen <ron@ron.dk> - 0.1.18-1 - Updated to 0.1.18

    2011-05-10 - Rasmus Ory Nielsen <ron@ron.dk> - 0.1.16-1 - Updated to 0.1.16

    2011-04-11 - Rasmus Ory Nielsen <ron@ron.dk> - 0.1.15-1 - Updated to 0.1.15

    2011-03-23 - Rasmus Ory Nielsen <ron@ron.dk> - 0.1.14-1 - Updated to 0.1.14 - Build shared library instead of static

    2011-02-09 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.12a-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild

    2010-12-06 - Rasmus Ory Nielsen <ron@ron.dk> - 0.1.12a-2 - Fixed header files directory ownership - Added missing header files

    2010-12-06 - Rasmus Ory Nielsen <ron@ron.dk> - 0.1.12a-1 - Updated to 0.1.12a

    2010-11-23 - Adam Huffman <bloch@verdurin.com> - 0.1.8-4 - cleanup man page handling

    2010-10-10 - Adam Huffman <bloch@verdurin.com> - 0.1.8-4 - fix attributes for devel subpackage - fix library location

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