python26-biopython-1.58-1.el5.x86_64.rpm


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Description

python26-biopython - Python tools for computational molecular biology

Distribution: CentOS 5
Repository: PUIAS Computational x86_64
Package name: python26-biopython
Package version: 1.58
Package release: 1.el5
Package architecture: x86_64
Package type: rpm
Installed size: 17.57 MB
Download size: 5.55 MB
Official Mirror: springdale.math.ias.edu
A set of freely available Python tools for computational molecular biology.

Alternatives

Provides

  • MMCIFlex.so()(64bit)
  • _CKDTree.so()(64bit)
  • _pwm.so()(64bit)
  • cluster.so()(64bit)
  • cnexus.so()(64bit)
  • cpairwise2.so()(64bit)
  • python26-biopython = 1.58-1.el5
  • trie.so()(64bit)

    Install Howto

    1. Create the repository config file /etc/yum.repos.d/puias-computational.repo:
      [puias-computational]
      name=PUIAS Computational
      baseurl=http://springdale.math.ias.edu/data/puias/computational/5/x86_64/
      enabled=1
      gpgcheck=0
      
    2. Install python26-biopython rpm package:
      # yum install python26-biopython

    Files

    • /usr/lib64/python2.6/site-packages/biopython-1.58-py2.6.egg-info
    • /usr/lib64/python2.6/site-packages/Bio/DocSQL.py
    • /usr/lib64/python2.6/site-packages/Bio/DocSQL.pyc
    • /usr/lib64/python2.6/site-packages/Bio/DocSQL.pyo
    • /usr/lib64/python2.6/site-packages/Bio/File.py
    • /usr/lib64/python2.6/site-packages/Bio/File.pyc
    • /usr/lib64/python2.6/site-packages/Bio/File.pyo
    • /usr/lib64/python2.6/site-packages/Bio/HotRand.py
    • /usr/lib64/python2.6/site-packages/Bio/HotRand.pyc
    • /usr/lib64/python2.6/site-packages/Bio/HotRand.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Index.py
    • /usr/lib64/python2.6/site-packages/Bio/Index.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Index.pyo
    • /usr/lib64/python2.6/site-packages/Bio/LogisticRegression.py
    • /usr/lib64/python2.6/site-packages/Bio/LogisticRegression.pyc
    • /usr/lib64/python2.6/site-packages/Bio/LogisticRegression.pyo
    • /usr/lib64/python2.6/site-packages/Bio/MarkovModel.py
    • /usr/lib64/python2.6/site-packages/Bio/MarkovModel.pyc
    • /usr/lib64/python2.6/site-packages/Bio/MarkovModel.pyo
    • /usr/lib64/python2.6/site-packages/Bio/MaxEntropy.py
    • /usr/lib64/python2.6/site-packages/Bio/MaxEntropy.pyc
    • /usr/lib64/python2.6/site-packages/Bio/MaxEntropy.pyo
    • /usr/lib64/python2.6/site-packages/Bio/NaiveBayes.py
    • /usr/lib64/python2.6/site-packages/Bio/NaiveBayes.pyc
    • /usr/lib64/python2.6/site-packages/Bio/NaiveBayes.pyo
    • /usr/lib64/python2.6/site-packages/Bio/ParserSupport.py
    • /usr/lib64/python2.6/site-packages/Bio/ParserSupport.pyc
    • /usr/lib64/python2.6/site-packages/Bio/ParserSupport.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Search.py
    • /usr/lib64/python2.6/site-packages/Bio/Search.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Search.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Seq.py
    • /usr/lib64/python2.6/site-packages/Bio/Seq.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Seq.pyo
    • /usr/lib64/python2.6/site-packages/Bio/SeqFeature.py
    • /usr/lib64/python2.6/site-packages/Bio/SeqFeature.pyc
    • /usr/lib64/python2.6/site-packages/Bio/SeqFeature.pyo
    • /usr/lib64/python2.6/site-packages/Bio/SeqRecord.py
    • /usr/lib64/python2.6/site-packages/Bio/SeqRecord.pyc
    • /usr/lib64/python2.6/site-packages/Bio/SeqRecord.pyo
    • /usr/lib64/python2.6/site-packages/Bio/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/_py3k.py
    • /usr/lib64/python2.6/site-packages/Bio/_py3k.pyc
    • /usr/lib64/python2.6/site-packages/Bio/_py3k.pyo
    • /usr/lib64/python2.6/site-packages/Bio/cpairwise2.so
    • /usr/lib64/python2.6/site-packages/Bio/kNN.py
    • /usr/lib64/python2.6/site-packages/Bio/kNN.pyc
    • /usr/lib64/python2.6/site-packages/Bio/kNN.pyo
    • /usr/lib64/python2.6/site-packages/Bio/pairwise2.py
    • /usr/lib64/python2.6/site-packages/Bio/pairwise2.pyc
    • /usr/lib64/python2.6/site-packages/Bio/pairwise2.pyo
    • /usr/lib64/python2.6/site-packages/Bio/trie.so
    • /usr/lib64/python2.6/site-packages/Bio/triefind.py
    • /usr/lib64/python2.6/site-packages/Bio/triefind.pyc
    • /usr/lib64/python2.6/site-packages/Bio/triefind.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Affy/CelFile.py
    • /usr/lib64/python2.6/site-packages/Bio/Affy/CelFile.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Affy/CelFile.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Affy/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Affy/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Affy/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/AlignInfo.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/AlignInfo.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/AlignInfo.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/Generic.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/Generic.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/Generic.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Clustalw.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Clustalw.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Clustalw.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Dialign.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Dialign.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Dialign.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Mafft.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Mafft.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Mafft.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Muscle.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Muscle.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Muscle.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Prank.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Prank.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Prank.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Probcons.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Probcons.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_Probcons.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_TCoffee.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_TCoffee.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/_TCoffee.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Align/Applications/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/ClustalIO.py
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/ClustalIO.pyc
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/ClustalIO.pyo
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/EmbossIO.py
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/EmbossIO.pyc
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/EmbossIO.pyo
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/FastaIO.py
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/FastaIO.pyc
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/FastaIO.pyo
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/Interfaces.py
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/Interfaces.pyc
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/Interfaces.pyo
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/NexusIO.py
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/NexusIO.pyc
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/NexusIO.pyo
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/PhylipIO.py
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/PhylipIO.pyc
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/PhylipIO.pyo
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/StockholmIO.py
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/StockholmIO.pyc
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/StockholmIO.pyo
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/AlignIO/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Alphabet/IUPAC.py
    • /usr/lib64/python2.6/site-packages/Bio/Alphabet/IUPAC.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Alphabet/IUPAC.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Alphabet/Reduced.py
    • /usr/lib64/python2.6/site-packages/Bio/Alphabet/Reduced.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Alphabet/Reduced.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Alphabet/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Alphabet/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Alphabet/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Application/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Application/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Application/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Blast/Applications.py
    • /usr/lib64/python2.6/site-packages/Bio/Blast/Applications.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Blast/Applications.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Blast/NCBIStandalone.py
    • /usr/lib64/python2.6/site-packages/Bio/Blast/NCBIStandalone.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Blast/NCBIStandalone.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Blast/NCBIWWW.py
    • /usr/lib64/python2.6/site-packages/Bio/Blast/NCBIWWW.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Blast/NCBIWWW.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Blast/NCBIXML.py
    • /usr/lib64/python2.6/site-packages/Bio/Blast/NCBIXML.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Blast/NCBIXML.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Blast/ParseBlastTable.py
    • /usr/lib64/python2.6/site-packages/Bio/Blast/ParseBlastTable.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Blast/ParseBlastTable.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Blast/Record.py
    • /usr/lib64/python2.6/site-packages/Bio/Blast/Record.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Blast/Record.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Blast/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Blast/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Blast/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/CAPS/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/CAPS/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/CAPS/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Cluster/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Cluster/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Cluster/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Cluster/cluster.so
    • /usr/lib64/python2.6/site-packages/Bio/Compass/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Compass/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Compass/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Crystal/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Crystal/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Crystal/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Data/CodonTable.py
    • /usr/lib64/python2.6/site-packages/Bio/Data/CodonTable.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Data/CodonTable.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Data/IUPACData.py
    • /usr/lib64/python2.6/site-packages/Bio/Data/IUPACData.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Data/IUPACData.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Data/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Data/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Data/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Emboss/Applications.py
    • /usr/lib64/python2.6/site-packages/Bio/Emboss/Applications.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Emboss/Applications.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Emboss/Primer3.py
    • /usr/lib64/python2.6/site-packages/Bio/Emboss/Primer3.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Emboss/Primer3.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Emboss/PrimerSearch.py
    • /usr/lib64/python2.6/site-packages/Bio/Emboss/PrimerSearch.pyc
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    • /usr/lib64/python2.6/site-packages/Bio/Emboss/__init__.py
    • /usr/lib64/python2.6/site-packages/Bio/Emboss/__init__.pyc
    • /usr/lib64/python2.6/site-packages/Bio/Emboss/__init__.pyo
    • /usr/lib64/python2.6/site-packages/Bio/Entrez/Parser.py
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    Changelog

    2011-09-20 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.58-1 - Update to upstream 1.58

    2011-02-08 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.55-0.2.b - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild

    2010-08-20 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.55-0.1.b - Update to 1.55 beta - BuildRequires: flex-static, libraries are now split out

    2010-07-21 - David Malcolm <dmalcolm@redhat.com> - 1.54-2 - Rebuilt for https://fedoraproject.org/wiki/Features/Python_2.7/MassRebuild

    2010-05-21 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.54-1 - Update to upstream 1.54

    2010-04-06 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.54-0.1.b - Update to 1.54 beta

    2009-12-15 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.53-1 - Update to upstream 1.53

    2009-10-15 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.52-1 - Update to latest upstream (1.52)

    2009-08-18 - Alex Lancaster <alexlan[AT]fedoraproject org> - 1.51-1 - Update to upstream 1.51 - Drop mx {Build}Requires, no longer used upstream - Remove Martel modules, no longer distributed upstream - Add flex to BuildRequires, patch setup to build Bio.PDB.mmCIF.MMCIFlex as per upstream: http://bugzilla.open-bio.org/show_bug.cgi?id=2619

    2009-07-26 - Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.49-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild

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