pysam26-0.1.2-2.sdl5.x86_64.rpm


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Description

pysam26 - Python interface for the SAM/BAM sequence alignment and mapping format

Distribution: CentOS 5
Repository: PUIAS Computational x86_64
Package name: pysam26
Package version: 0.1.2
Package release: 2.sdl5
Package architecture: x86_64
Package type: rpm
Installed size: 376.56 KB
Download size: 157.61 KB
Official Mirror: springdale.math.ias.edu
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

Alternatives

Provides

  • csamtools.so()(64bit)
  • pysam26 = 0.1.2-2.sdl5

    Download

    Install Howto

    1. Create the repository config file /etc/yum.repos.d/puias-computational.repo:
      [puias-computational]
      name=PUIAS Computational
      baseurl=http://springdale.math.ias.edu/data/puias/computational/5/x86_64/
      enabled=1
      gpgcheck=0
      
    2. Install pysam26 rpm package:
      # yum install pysam26

    Files

    • /usr/lib64/python2.6/site-packages/pysam-0.1.2-py2.6.egg-info
    • /usr/lib64/python2.6/site-packages/pysam/Pileup.py
    • /usr/lib64/python2.6/site-packages/pysam/Pileup.pyc
    • /usr/lib64/python2.6/site-packages/pysam/Pileup.pyo
    • /usr/lib64/python2.6/site-packages/pysam/__init__.py
    • /usr/lib64/python2.6/site-packages/pysam/__init__.pyc
    • /usr/lib64/python2.6/site-packages/pysam/__init__.pyo
    • /usr/lib64/python2.6/site-packages/pysam/csamtools.so
    • /usr/share/doc/pysam26-0.1.2/COPYING
    • /usr/share/doc/pysam26-0.1.2/INSTALL
    • /usr/share/doc/pysam26-0.1.2/KNOWN_BUGS
    • /usr/share/doc/pysam26-0.1.2/MANIFEST.in
    • /usr/share/doc/pysam26-0.1.2/PKG-INFO
    • /usr/share/doc/pysam26-0.1.2/THANKS

    Changelog

    2013-07-11 - Josko Plazonic <plazonic@math.princeton.edu> 0.1.2-1 - account for bwa 0.5.9 differences

    2013-05-31 - Josko Plazonic <plazonic@math.princeton.edu> 0.1.2-1 - initial build

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