pysam26-0.1.2-2.sdl5.x86_64.rpm


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Description

pysam26 - Python interface for the SAM/BAM sequence alignment and mapping format

Property Value
Distribution CentOS 5
Repository PUIAS Computational x86_64
Package name pysam26
Package version 0.1.2
Package release 2.sdl5
Package architecture x86_64
Package type rpm
Installed size 376.56 KB
Download size 157.61 KB
Official Mirror springdale.math.ias.edu
Pysam is a python module for reading and manipulating Samfiles. It's a
lightweight wrapper of the samtools C-API. Pysam also includes an interface
for tabix.

Alternatives

Package Version Architecture Repository
pysam26-0.1.2-2.sdl5.i386.rpm 0.1.2 i386 PUIAS Computational
pysam26 - - -

Requires

Name Value
libc.so.6()(64bit) -
libc.so.6(GLIBC_2.2.5)(64bit) -
libc.so.6(GLIBC_2.3)(64bit) -
libc.so.6(GLIBC_2.3.4)(64bit) -
libc.so.6(GLIBC_2.4)(64bit) -
libpthread.so.0()(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libpython2.6.so.1.0()(64bit) -
libz.so.1()(64bit) -
rtld(GNU_HASH) -

Provides

Name Value
csamtools.so()(64bit) -
pysam26 = 0.1.2-2.sdl5

Download

Type URL
Binary Package pysam26-0.1.2-2.sdl5.x86_64.rpm
Source Package pysam26-0.1.2-2.sdl5.src.rpm

Install Howto

  1. Create the repository config file /etc/yum.repos.d/puias-computational.repo:
    [puias-computational]
    name=PUIAS Computational
    baseurl=http://springdale.math.ias.edu/data/puias/computational/5/x86_64/
    enabled=1
    gpgcheck=0
    
  2. Install pysam26 rpm package:
    # yum install pysam26

Files

Path
/usr/lib64/python2.6/site-packages/pysam-0.1.2-py2.6.egg-info
/usr/lib64/python2.6/site-packages/pysam/Pileup.py
/usr/lib64/python2.6/site-packages/pysam/Pileup.pyc
/usr/lib64/python2.6/site-packages/pysam/Pileup.pyo
/usr/lib64/python2.6/site-packages/pysam/__init__.py
/usr/lib64/python2.6/site-packages/pysam/__init__.pyc
/usr/lib64/python2.6/site-packages/pysam/__init__.pyo
/usr/lib64/python2.6/site-packages/pysam/csamtools.so
/usr/share/doc/pysam26-0.1.2/COPYING
/usr/share/doc/pysam26-0.1.2/INSTALL
/usr/share/doc/pysam26-0.1.2/KNOWN_BUGS
/usr/share/doc/pysam26-0.1.2/MANIFEST.in
/usr/share/doc/pysam26-0.1.2/PKG-INFO
/usr/share/doc/pysam26-0.1.2/THANKS

Changelog

2013-07-11 - Josko Plazonic <plazonic@math.princeton.edu> 0.1.2-1
- account for bwa 0.5.9 differences
2013-05-31 - Josko Plazonic <plazonic@math.princeton.edu> 0.1.2-1
- initial build

See Also

Package Description
pytest26-2.3.4-1.el5.noarch.rpm Simple powerful testing with Python
python-babel-0.9.5-2.el5.noarch.rpm Library for internationalizing Python applications
python-docutils-0.5-3.el5.noarch.rpm A system for processing plaintext documentation
python-gdata-2.0.11-2.sdl5.noarch.rpm A Python module for accessing online Google services
python-nose-0.10.3-1.PU_IAS.5.noarch.rpm A discovery-based unittest extension for Python
python-pygments-1.4-3.el5.noarch.rpm Syntax highlighting engine written in Python
python26-2.6.8-2.el5.x86_64.rpm An interpreted, interactive, object-oriented programming language
python26-Beaver-31-2.sdl5.noarch.rpm python daemon that munches on logs and sends their contents to logstash
python26-Cython-0.18-4.el5.x86_64.rpm A language for writing Python extension modules
python26-HTSeq-0.5.4p5-1.el5.x86_64.rpm A framework to process and analyze data from high-throughput sequencing (HTS) assays
python26-argparse-1.2.1-3.el5.noarch.rpm Optparse inspired command line parser for Python
python26-babel-0.9.5-2.el5.noarch.rpm Library for internationalizing Python applications
python26-biopython-1.58-1.el5.x86_64.rpm Python tools for computational molecular biology
python26-boto-2.25.0-2.el5.noarch.rpm A simple lightweight interface to Amazon Web Services
python26-conf_d-0.0.4-1.el5.noarch.rpm read configuration files, conf.d style
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